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Preheat oven to 375 degrees F.
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Boil macaroni in a large pan of salted boiling water until it is al dente.This should take about 8 minutes. Drain macaroni and transfer to a bowl. Stir in 2 T. butter, set aside.
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Add the remaining butter to a large pan and melt over medium heat. Saute the minced onion in the butter until it is golden. This should take 6 to 8 minutes. Stir in the flour and cook for 3 minutes. Stick the cloves into the onion half and add to the pan along with the two bay leaves. Whisk milk into the flour/butter mixture and bring to a boil. Once the milk begins to boil, reduce the heat to medium and cook, stirring occasionally, until the mixture has thickened. This should take 5 to 7 minutes. Remove the sauce from the heat once it has thickened and strain it through a fine-mesh sieve over the macaroni. Stir in 3/4 of the cheese, the nutmeg, and the salt and pepper.
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Transfer macaroni and cheese to a large baking dish (9 inch by 13 inch). Top with remaining cheese and the bread cubes.
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Bake for 40 to 45 minutes.The bread cubes should be golden brown and the macaroni and cheese mixture should be bubbly when your dish is done.
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Remove macaroni and cheese from the oven and let it sit on your counter for a few minutes before serving. This will allow the dish to solidity a bit.
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This recipe serves 8 to 10 persons. it can easily be halved .